Creating a horizontal bar chart in R to display sequence of activities

允我心安 提交于 2019-12-20 06:33:59

问题


The dataset "patients" is an eventlog of patients visiting a clinic and getting treatment. The script below gives a data frame with traces or sequence of activities in the eventlog, trace_id and absolute frequency of the cases following the particular trace. I wish to create a dynamic horizontal bar chart using ggplot2 or plotly such that the traces are represented like the snapshot attached with the absolute frequency in % at the top of the bar with axes labels.

Thanks and please help!

library("bupaR")
traces(patients, output_traces = T, output_cases = F)


回答1:


Hope this helps (I am not able to get frequency however)

library(splitstackshape)

tr <- data.frame(traces(patients, output_traces = T, output_cases = F))
tr.df <- cSplit(tr, "trace", ",")

tr.df <- tr.df[,c(1,4:9)]
tr.df <- melt(tr.df, id.vars = "trace_id")

windows()
ggplot(data = tr.df, aes(x = variable,y = trace_id, fill = value, label = 
value)) + 
geom_tile(colour = "white") + 
geom_text(colour = "white", fontface = "bold", size = 2) +
scale_fill_discrete(na.value="transparent") +
theme(legend.position="none")

EDIT 1:

library(splitstackshape)
library(bupaR)
library(ggplot2)

tr <- data.frame(traces(patients, output_traces = T, output_cases = F))
tr.df <- cSplit(tr, "trace", ",")

tr.df <- tr.df[,c(1,4:9)]
tr.df <- melt(tr.df, id.vars = "trace_id")
tr.df <- tr.df[order(tr.df$trace_id),]

tr.label <- data.frame(id = tr$trace_id, freq = tr$absolute_frequency)
tr.label <- tr.label[order(tr.label$id),]

windows()
ggplot(data = tr.df, aes(x = variable,y = trace_id, fill = value, label = value)) + 
geom_tile(colour = "white") + 
geom_text(colour = "white", fontface = "bold", size = 2) +
scale_fill_discrete(na.value="transparent") +
theme(legend.position="none") + 
geom_text(data = tr.label, aes(label = freq, y = id, x = 6), nudge_x = 0.3,  
          colour = "black", fontface = "bold", inherit.aes = FALSE) 



来源:https://stackoverflow.com/questions/47278387/creating-a-horizontal-bar-chart-in-r-to-display-sequence-of-activities

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