networkx

FileNotFoundError: [WinError 2] “neato” not found in path

烂漫一生 提交于 2020-05-17 05:29:23
问题 I am trying to visualize my network. While there is no error in installing and importing the pydotplus and networkx.drawing.nx_pydot import graphviz_layout, when I try to draw it, I am receiving the error below. FileNotFoundError: [WinError 2] "neato" not found in path. How can I fix this? 来源: https://stackoverflow.com/questions/56672123/filenotfounderror-winerror-2-neato-not-found-in-path

Find connected components in list of triangle vertices

风格不统一 提交于 2020-05-16 05:53:10
问题 Consider two graphs, G1 = (V1, E1), G2 = (V2, E2) V1 = {1,2,3,4,5,6} V2 = {7,8,9,10,11,12} In space, these vertices are connected by triangles faces (each with three vertices) F1 = [[ 2, 1, 0], [ 0, 3, 2], [ 1, 4, 0], [ 0, 4, 3], [ 5, 1, 2], [ 3, 5, 2], [ 5, 4, 1], [ 4, 5, 3]] F2 = [[ 8, 7, 6], [ 6, 9, 8], [ 7, 10, 6], [ 6, 10, 9], [11, 7, 8], [ 9, 11, 8], [11, 10, 7], [10, 11, 9]] The above is what I am trying to find. If we are given the entire array of faces: faces = [[ 2, 1, 0], [ 0, 3, 2

Remove matplotlib depreciation warning from showing

江枫思渺然 提交于 2020-05-15 11:14:11
问题 I'm getting simply a MatplotlibDepreciationWarning which I don't like to see on my console. And therefore I don't want to see it. Here's the warning: /home/.../pyvirt/networkx/lib/python3.6/site-packages/networkx/drawing/nx_pylab.py:579: MatplotlibDeprecationWarning:The iterable function was deprecated in Matplotlib 3.1 and will be removed in 3.3. Use np.iterable instead. if not cb.iterable(width):` So if anyone can suggest any way to remove this depreciation warning from showing, it would be

Remove matplotlib depreciation warning from showing

笑着哭i 提交于 2020-05-15 11:14:08
问题 I'm getting simply a MatplotlibDepreciationWarning which I don't like to see on my console. And therefore I don't want to see it. Here's the warning: /home/.../pyvirt/networkx/lib/python3.6/site-packages/networkx/drawing/nx_pylab.py:579: MatplotlibDeprecationWarning:The iterable function was deprecated in Matplotlib 3.1 and will be removed in 3.3. Use np.iterable instead. if not cb.iterable(width):` So if anyone can suggest any way to remove this depreciation warning from showing, it would be

Python Graphs: Latex Math rendering of node labels

℡╲_俬逩灬. 提交于 2020-05-15 04:04:55
问题 I am using the following code to create a pygraphviz graph. But is it possible to make it render latex math equations (see Figure 1)? If not, is there an alternative python library that plots similar graphs but supports latex rendering ? import networkx as nx from networkx.drawing.nx_agraph import to_agraph G=nx.DiGraph() G.add_node(1,color='blue',style='filled', fillcolor='white',shape='square', label="$3x+2$") G.add_node(2) G.add_node(3) G.add_edge(1, 2) G.add_edge(1, 3) G.add_edge(3, 4) A

Python Graphs: Latex Math rendering of node labels

…衆ロ難τιáo~ 提交于 2020-05-15 04:04:06
问题 I am using the following code to create a pygraphviz graph. But is it possible to make it render latex math equations (see Figure 1)? If not, is there an alternative python library that plots similar graphs but supports latex rendering ? import networkx as nx from networkx.drawing.nx_agraph import to_agraph G=nx.DiGraph() G.add_node(1,color='blue',style='filled', fillcolor='white',shape='square', label="$3x+2$") G.add_node(2) G.add_node(3) G.add_edge(1, 2) G.add_edge(1, 3) G.add_edge(3, 4) A

Python Graphs: Latex Math rendering of node labels

天大地大妈咪最大 提交于 2020-05-15 04:03:29
问题 I am using the following code to create a pygraphviz graph. But is it possible to make it render latex math equations (see Figure 1)? If not, is there an alternative python library that plots similar graphs but supports latex rendering ? import networkx as nx from networkx.drawing.nx_agraph import to_agraph G=nx.DiGraph() G.add_node(1,color='blue',style='filled', fillcolor='white',shape='square', label="$3x+2$") G.add_node(2) G.add_node(3) G.add_edge(1, 2) G.add_edge(1, 3) G.add_edge(3, 4) A

Create Networkx Graph from CSV file in Python 3

萝らか妹 提交于 2020-05-13 05:14:09
问题 I am trying to build a NetworkX social network graph from a CSV file. I am using Networkx 2.1 and Python 3 I followed this post with no luck because I keep receiving the error: AttributeError: 'list' object has no attribute 'decode'. My goal is to make the weights display thicker edges for the higher weights. Here is my code so far: import networkx as nx import csv Data = open('testest.csv', "r", encoding='utf8') read = csv.reader(Data) Graphtype=nx.Graph() # use net.Graph() for undirected

Create Networkx Graph from CSV file in Python 3

情到浓时终转凉″ 提交于 2020-05-13 05:14:09
问题 I am trying to build a NetworkX social network graph from a CSV file. I am using Networkx 2.1 and Python 3 I followed this post with no luck because I keep receiving the error: AttributeError: 'list' object has no attribute 'decode'. My goal is to make the weights display thicker edges for the higher weights. Here is my code so far: import networkx as nx import csv Data = open('testest.csv', "r", encoding='utf8') read = csv.reader(Data) Graphtype=nx.Graph() # use net.Graph() for undirected

Transforming pandas dataframe column to networkx graph with source and target

白昼怎懂夜的黑 提交于 2020-05-12 03:23:37
问题 I have a DataFrame in pandas with information about people location in time. It is about 300+ million rows. Here is the sample where each Name is assigned to a unique index by group.by and sorted by Name and Year : import pandas as pd inp = [{'Name': 'John', 'Year':2018, 'Address':'Beverly hills'}, {'Name': 'John', 'Year':2018, 'Address':'Beverly hills'}, {'Name': 'John', 'Year':2019, 'Address':'Beverly hills'}, {'Name': 'John', 'Year':2019, 'Address':'Orange county'}, {'Name': 'John', 'Year'