conda

Activate conda environment on execution of Singularity container in Nextflow

由 僤鯓⒐⒋嵵緔 提交于 2020-02-23 08:34:02
问题 I am using Singularity containers to run commands from Nextflow workflow management system. I have a conda environment inside Singularity which I can activate when I shell into the container singularity pull shub://brucemoran/Singularity:pcgr.centos7 singularity shell brucemoran-Singularity-pcgr.centos7.img #<inside container> source activate pcgr When Nextflow executes I have defined to source activate pcgr which I think should activate the conda env. But I get an unbound variable HOST

Activate conda environment on execution of Singularity container in Nextflow

由 旧巷老猫 提交于 2020-02-23 08:31:53
问题 I am using Singularity containers to run commands from Nextflow workflow management system. I have a conda environment inside Singularity which I can activate when I shell into the container singularity pull shub://brucemoran/Singularity:pcgr.centos7 singularity shell brucemoran-Singularity-pcgr.centos7.img #<inside container> source activate pcgr When Nextflow executes I have defined to source activate pcgr which I think should activate the conda env. But I get an unbound variable HOST

安装Tensorflow windows10

由 荒凉一梦 提交于 2020-02-23 00:44:51
一：安装Anaconda和Tensorflow 1：从官方网站下载Anaconda https://www.anaconda.com/download/ 2：进行软件安装（这个和普通的没什么特别区别） 注意一点： 3：安装完成Anaconda之后进行环境变量的测试 进入到windows中的命令模式： （1）检测anaconda环境是否安装成功：conda --version 四，　安装Tensorflow 　　　安装Tensorflow时，需要从Anaconda仓库中下载，一般默认链接的都是国外镜像地址，下载肯定很慢啊（跨国呢！），这里我是用国内清华镜像，需要改一下链接镜像的地址。这里，我们打开刚刚安装好的Anaconda中的 Anaconda Prompt，然后输入： 　　　　conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/ 　　　　conda config --set show_channel_urls yes 　　　　这两行代码用来改成连接清华镜像的 　　　　接下来安装Tensorflow，在Anaconda Prompt中输入： 　　　　conda create -n tensorflow python=3.5.2 （3.5

Anaconda Installation points to network drive as home folder - cannot start Spyder and Anaconda Navigator

由 孤街醉人 提交于 2020-02-22 05:15:15
问题 After installing Anaconda 4.3.1, Spyder and Anaconda Navigator do not run. When trying anaconda-navigator through the Anaconda Prompt, I get as an end error: binstar_client.errors.BinstarError: O:: The system cannot find the path specified conda config --show: (C:\Anaconda3) C:\Windows\system32>conda config --show add_anaconda_token: True add_pip_as_python_dependency: True allow_softlinks: True always_copy: False always_softlink: False always_yes: False auto_update_conda: True binstar_upload:

Anaconda Installation points to network drive as home folder - cannot start Spyder and Anaconda Navigator

由 a 夏天 提交于 2020-02-22 05:12:48
问题 After installing Anaconda 4.3.1, Spyder and Anaconda Navigator do not run. When trying anaconda-navigator through the Anaconda Prompt, I get as an end error: binstar_client.errors.BinstarError: O:: The system cannot find the path specified conda config --show: (C:\Anaconda3) C:\Windows\system32>conda config --show add_anaconda_token: True add_pip_as_python_dependency: True allow_softlinks: True always_copy: False always_softlink: False always_yes: False auto_update_conda: True binstar_upload:

Anaconda Installation points to network drive as home folder - cannot start Spyder and Anaconda Navigator

由 旧巷老猫 提交于 2020-02-22 05:11:42
问题 After installing Anaconda 4.3.1, Spyder and Anaconda Navigator do not run. When trying anaconda-navigator through the Anaconda Prompt, I get as an end error: binstar_client.errors.BinstarError: O:: The system cannot find the path specified conda config --show: (C:\Anaconda3) C:\Windows\system32>conda config --show add_anaconda_token: True add_pip_as_python_dependency: True allow_softlinks: True always_copy: False always_softlink: False always_yes: False auto_update_conda: True binstar_upload:

Activating conda environment from c# code (or what is the differences between manually opening cmd and opening it from c#?)

由 不打扰是莪最后的温柔 提交于 2020-02-21 23:57:31
问题 I want to run a gpu accelerated python script on windows using conda environment (dlwin36). I’m trying to activate dlwin36 and execute a script: 1) activate dlwin36 2) set KERAS_BACKEND=tensorflow 3) python myscript.py If I manually open cmd on my machine and write:"activate dlwin36" it works. But when I try opening a cmd from c# I get: “activate is not recognized as an internal or external command, operable program or batch file.” I tried using the following methods: Command chaining: var

Activating conda environment from c# code (or what is the differences between manually opening cmd and opening it from c#?)

由 半腔热情 提交于 2020-02-21 23:57:02
问题 I want to run a gpu accelerated python script on windows using conda environment (dlwin36). I’m trying to activate dlwin36 and execute a script: 1) activate dlwin36 2) set KERAS_BACKEND=tensorflow 3) python myscript.py If I manually open cmd on my machine and write:"activate dlwin36" it works. But when I try opening a cmd from c# I get: “activate is not recognized as an internal or external command, operable program or batch file.” I tried using the following methods: Command chaining: var

Trouble updating to Spyder 4.0.0

由 ↘锁芯ラ 提交于 2020-02-21 10:36:32
问题 I am under Windows 10, 64 bits. I tried several time to update Spyder 4.0.0 with both the Anaconda Prompt and the Anaconda Navigator. It failed. I uninstalled Anaconda and reinstalled it. Then I ran the Anaconda Prompt as an Administrator and executed : conda update spyder The version of Spyder was 3.3.6. I tried this command : conda install spyder=4.0.0 The prompt returned : Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve.

Trouble updating to Spyder 4.0.0

由 末鹿安然 提交于 2020-02-21 10:35:12
问题 I am under Windows 10, 64 bits. I tried several time to update Spyder 4.0.0 with both the Anaconda Prompt and the Anaconda Navigator. It failed. I uninstalled Anaconda and reinstalled it. Then I ran the Anaconda Prompt as an Administrator and executed : conda update spyder The version of Spyder was 3.3.6. I tried this command : conda install spyder=4.0.0 The prompt returned : Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve.
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