问题
I wanted to ask the Snakemake community if anybody has had success implementing Snakemake workflows in AWS Batch.
Page 4 of a recent publication from Oct 2018 seems to suggest that Snakemake does not work on AWS as it cannot handle resource management. Here is the publication: Tibanna: software for scalable execution of portable pipelines on the cloud - https://www.biorxiv.org/content/early/2019/04/29/440974.full.pdf
Yes, the same paper does suggest the Snakemake works well with the Google Cloud Platform (GCP).
However, the Snakemake documentation states: "Snakemake 4.0 and later supports execution in the cloud via Kubernetes. This is independent of the cloud provider." - https://snakemake.readthedocs.io/en/stable/executable.html#cloud-support
Hence, I would like to know if anyone has implemented Snakemake with AWS Batch.
Also, while on this question, does anyone know of any github/bitbucket page that details the successful implementation of Snakemake with the GCP.
Thanks in advance.
来源：https://stackoverflow.com/questions/56420850/use-of-snakemake-workflows-in-aws-batch