rpy2

I'm pretty new to Linux and I'm having some serious trouble installing Rpy2. I had an older versions of Rpy2 installed by the synaptic package manager, but I needed an updated version and removed it (all files in the Rpy2 directory as described in the Rpy2 documentation). I downloaded the tar.gz. from SourceForge and ran this code: tar -xzf rpy2-2.1.8.tar.gz cd rpy2-2.1.8 python setup.py build install It appeared to be copying files as it should, but then multiple pages of error messages (highlighted in bold ) just start floating: running build_ext Configuration for R as a library: include

I have a R script in a .R file that I would like to execute. How can I load it? I'd like to source("/path/to/file.R") within the python code, but with this name! Simply import R's source function like any other! import rpy2.robjects as robjects r_source = robjects.r['source'] r_source("path/to/file.R") I use a trick to have both R code and Python script in my editor, you can have a look at this example https://stackoverflow.com/a/55900840/5350311 , I hope it is useful for you. 来源： https://stackoverflow.com/questions/19567081/rpy2-import-external-r-file

I'm trying to plot four scatter plots in 2 x 2 arrangement in R (I'm actually plotting via rpy2). I'd like each to have an aspect ratio of 1 but also be on the same scale, so identical X and Y ticks for all the subplots so that they can be compared. I tried to do this with par : par(mfrow=c(2,2)) # scatter 1 plot(x, y, "p", asp=1) # scatter 2 plot(a, b, "p", asp=1) # ... Edit: Here's a direct example of what I have now: > par(mfrow=c(2,2)) > for (n in 1:4) { plot(iris$Petal.Width, rnorm(length(iris$Petal.Width)), "p", asp=1) } which creates the right type of scatter but with different scales.

What is the equivalent of the following R code in Rpy2 in python? Var1 = c("navy", "darkgreen") names(Var1) = c("Class1", "Class2") ann_colors = list(Var1 = Var1) It's not clear what ann_colors is. When evaluated in R it gives: > ann_colors $Var1 Class1 Class2 "navy" "darkgreen" Is it an robject.ListVector ? I tried: robjects.ListVector({"Class1": "navy", "Class2": "green"}) but it's not quite it because I'm not sure how to tell the ListVector object that the name of this object is Var1 , i.e. something like list(Var1 = Var1) . How can this be properly translated to rpy2? If I understand right

I'm looking to work on a SPSS files (.sav) using pandas . In the absence of the SPSS program, here's what a typical file looks like when converted to .csv: On investigation into what the first two rows signify (I don't know SPSS), it seems that the first row contains the Label s, while the second row contains the VarName s. When I bring the file into pandas thus: import pandas.rpy.common as com def savtocsv(filename): w = com.robj.r('foreign::read.spss("%s", to.data.frame=TRUE)' % filename) w = com.convert_robj(w) return w and then do a head(), the first row (Label) is missing: How can labels

I am a bit confused about how to install R (via compilation) as a shared library. The instructions here ( Rpy2 ) say that I should do the following: # <go to the R source directory> make distclean ./configure --enable-R-shlib make make install but the first make ( make distclean ) would remove any previous installation of R under the same directory tree (e.g. the contents of the bin folder). What if I want to use the same installation for the R interpreter and the shared libraries? For example, say I want to use the interpreter to install R packages, and then the shared library of the

I am trying to run the rmagic functions extension example, but ipython crashes with console error message '\u used without hex digits in character string starting "c:\u". I suspect that this is an R error message caused by rmagic passing c:\path instead of c:\ or c:/. There is probably an easy way to fix this (IPython or Notebook startup parameters?) , but, as a newbie to rmagic and rpy2, I need some expert help please. The following simple snippet from the example causes the kernel to die: import rpy2 %load_ext rmagic %R x=1 I am a windows user... Found a solution to this ipython/windows