openmp

Openmp nested loop

狂风中的少年 提交于 2019-12-06 07:56:20
just playing around with openmp. Look at this code fragments: #pragma omp parallel { for( i =0;i<n;i++) { doing something } } and for( i =0;i<n;i++) { #pragma omp parallel { doing something } } Why is the first one a lot more slower (around the factor 5) than the second one? From theory I thought that the first one must be faster, because the parallel region is only created once and not n-times like the second? Can someone explain this to me? The code i want to parallelise has the following structure: for(i=0;i<n;i++) //wont be parallelizable { for(j=i+1;j<n;j++) //will be parallelized { doing

Openmp with mex in Matlab on mac

杀马特。学长 韩版系。学妹 提交于 2019-12-06 07:52:29
问题 I have OS X El Capitan and Matlab R2016a and I would like to use OpenMP, which has previously worked. I have managed to install gcc-5 via homebrew and have openmp working there. I can see from this thread GCC C/C++ MEX Matlab R2015 Mac OS X (with OpenMP) doesn't work that at least in R2014a, it was possible to insert mexopts.sh manually and edit it. However, I do not have such a file to use in order to redirect the compiler flag (CC) to point at the gcc-5 compiler that works with the -fopenmp

using openmp in windows R, does rtools support openmp?

半城伤御伤魂 提交于 2019-12-06 07:03:09
问题 I got lots of error messages when trying to use openmp in a c++ code for building my R package on windows 7: c:/rtools/mingw/bin/../lib/gcc/mingw32/4.5.0/libgomp.a(parallel.o):(.text+0x19): undefined reference to `_imp__pthread_getspecific' c:/rtools/mingw/bin/../lib/gcc/mingw32/4.5.0/libgomp.a(parallel.o):(.text+0x7a): undefined reference to `_imp__pthread_mutex_lock' c:/rtools/mingw/bin/../lib/gcc/mingw32/4.5.0/libgomp.a(env.o):(.text+0x510): undefined reference to `_imp__pthread_mutex_init

How to Reuse OMP Thread Pool, Created by Main Thread, in Worker Thread?

孤者浪人 提交于 2019-12-06 06:20:29
Near the start of my c++ application, my main thread uses OMP to parallelize several for loops. After the first parallelized for loop, I see that the threads used remain in existence for the duration of the application, and are reused for subsequent OMP for loops executed from the main thread, using the command (working in CentOS 7): for i in $(pgrep myApplication); do ps -mo pid,tid,fname,user,psr -p $i;done Later in my program, I launch a boost thread from the main thread, in which I parallelize a for loop using OMP. At this point, I see an entirely new set of threads are created, which has

OpenMP C++ - How to parallelize this function?

蓝咒 提交于 2019-12-06 06:18:32
问题 I'd like to parallelize this function but I'm new with open mp and I'd be grateful if someone could help me : void my_function(float** A,int nbNeurons,int nbOutput, float* p, float* amp){ float t=0; for(int r=0;r<nbNeurons;r++){ t+=p[r]; } for(int i=0;i<nbOutput;i++){ float coef=0; for(int r=0;r<nbNeurons;r++){ coef+=p[r]*A[r][i]; } amp[i]=coef/t; } } I don't know how to parallelize it properly because of the double loop for, for the moment, I only thought about doing a : #pragma omp parallel

Use of OpenMP chunk to break cache

孤者浪人 提交于 2019-12-06 05:44:28
I've been trying to increase the performance of my OpenMP solution which often has to deal with nested loops on arrays. Although I've managed to bring it down to 37 from 59 seconds of the serial implementation (on an ageing dual-core Intel T6600) I'm worried that cache synch gets lots of CPU attention (when the CPU should be solving my problem!). I've been fighting to set up the profiler so I haven't verified that claim but my question stands regardless. According to this lecture on load balancing: Instead of doing work, the CPUs are busy fighting over the only used cache line in the program.

How to get abstract syntax tree of a `c` program in `GCC`

五迷三道 提交于 2019-12-06 05:07:01
问题 How can I get the abstract syntax tree of a c program in gcc? I'm trying to automatically insert OpenMP pragmas to the input c program. I need to analyze nested for loops for finding dependencies so that I can insert appropriate OpenMP pragmas. So basically what I want to do is traverse and analyze the abstract syntax tree of the input c program. How do I achieve this? 回答1: You need full dataflow to find 'dependencies'. Then you will need to actually insert the OpenMP calls. What you want is

Compilation error when using Xcode 9.0 with clang (cannot specify -o when generating multiple output files)

半腔热情 提交于 2019-12-06 05:06:35
I updated my Xcode yesterday (version 9.0) and since then I cannot compile my code with clang anymore. It works great with with apple native compiler, but gives a compilation error with clang from macports. I will explain with more details now... I usually use clang 4.0 because it has openmp support and I change in Xcode by creating a user-defined setting as in the following figure. Image with how to use clang 4.0 from macports in Xcode This has been working perfectly for some time until I updated to Xcode 9.0. Now, I get the following error from clang compiler: cannot specify -o when

gcc auto-vectorisation (unhandled data-ref)

和自甴很熟 提交于 2019-12-06 04:46:17
I do not understand why such code is not vectorized with gcc 4.4.6 int MyFunc(const float *pfTab, float *pfResult, int iSize, int iIndex) { for (int i = 0; i < iSize; i++) pfResult[i] = pfResult[i] + pfTab[iIndex]; } note: not vectorized: unhandled data-ref However, if I write the following code int MyFunc(const float *pfTab, float *pfResult, int iSize, int iIndex) { float fTab = pfTab[iIndex]; for (int i = 0; i < iSize; i++) pfResult[i] = pfResult[i] + fTab; } gcc succeeds auto-vectorize this loop if I add omp directive int MyFunc(const float *pfTab, float *pfResult, int iSize, int iIndex) {

Parallel sections in OpenMP using a loop

半城伤御伤魂 提交于 2019-12-06 04:32:01
I wonder if there is any technique to create parallel sections in OpenMp using a for-loop. For example, instead of creating n different #pragma omp sections, I want to create them using an n-iteration for-loop with some changing parameters for each section. #pragma omp parallel sections { #pragma omp section { /* Executes in thread 1 */ } #pragma omp section { /* Executes in thread 2 */ } #pragma omp section { /* Executes in thread n */ } } Hristo Iliev With explicit OpenMP tasks: #pragma omp parallel { // Let only one thread create all tasks #pragma omp single nowait { for (int i = 0; i < num