openmp

Initialize variable for omp reduction

混江龙づ霸主 提交于 2021-02-19 08:40:24
问题 The OpenMP standard specifies an initial value for a reduction variable. So do I have to initialize the variable and how would I do that in the following case: int sum; //... for(int it=0;i<maxIt;i++){ #pragma omp parallel { #pragma omp for nowait for(int i=0;i<ct;i++) arrayX[i]=arrayY[i]; sum = 0; #pragma omp for reduction(+:sum) for(int i=0;i<ct;i++) sum+=arrayZ[i]; } //Use sum } Note that I use only 1 parallel region to minimize overhead and to allow the nowait in the first loop. Using

OpenMP not waiting all threads finish before end C program

我怕爱的太早我们不能终老 提交于 2021-02-17 03:19:36
问题 I have the following problem: My C program must count the number of occurrences of a list of words in a text file. I use OpenMP for this, and the program, in theory, has the correct logic. When I put some printfs inside a For Loop the result of the program is correct and always the same. When I remove printfs the result is incorrect, and with each execution its value changes. Given this scenario I think the reason is related to the execution time. With printfs the execution time is increased,

openMP: Running with all threads in parallel leads to out-of-memory-exceptions

时光毁灭记忆、已成空白 提交于 2021-02-11 14:41:36
问题 I want to shorten the runtime of an lengthy image processing algorithm, which is applied to multiple images by using parallel processing with openMP. The algorithm works fine with single or limited number (=2) of threads. But: The parallel processing with openMP requires lots of memory, leading to out-of-memory-exceptions, when running with the maximum number of possible threads. To resolve the issue, I replaced the "throwing of exceptions" with a "waiting for free memory" in case of low

Parallel program giving error “Undefined reference to _Kmpc_ok_to_fork”

一世执手 提交于 2021-02-10 22:42:19
问题 I am trying to compile the OPENMP fortran code on linux. I have around 230 subroutines. The code I used to compile the code is as follows: 1) At first I compiled each subroutine with the following command ifort -c -override-limits -openmp *.for Then all the subroutines have now a separate object file. 2) Then I tried to compile the object files to the executable by the following command ifort *.o -o myprogram I got the following error : WINDWAVE.F90:(.text+0x1c9d): undefined reference to `_

makefile error: make: *** No rule to make target `omp.h' ; with OpenMP

旧巷老猫 提交于 2021-02-10 19:52:44
问题 all, I was compiling a C program with OpenMP. It's my first time to use makefile. When excuting "make", the gcc reports the error make: * No rule to make target omp.h', needed by smooth.o'. Stop. However the omp.h is in the /usr/lib/gcc/i686-linux-gnu/4.6/include/omp.h , I am wondering how to fix it. Could anyone help me? Thank you. CC=gcc CFLAGS = -fopenmp all: smooth smooth: smooth.o ompsooth.o $(CC) $(CFLAGS) -o smooth smooth.o ompsmooth.o ompsmooth.o: ompsmooth.c assert.h stdio.h stdlib.h

Why my parallel code using openMP atomic takes a longer time than serial code?

时光毁灭记忆、已成空白 提交于 2021-02-10 15:51:01
问题 The snippet of my serial code is shown below. Program main use omp_lib Implicit None Integer :: i, my_id Real(8) :: t0, t1, t2, t3, a = 0.0d0 !$ t0 = omp_get_wtime() Call CPU_time(t2) ! ------------------------------------------ ! Do i = 1, 100000000 a = a + Real(i) End Do ! ------------------------------------------ ! Call CPU_time(t3) !$ t1 = omp_get_wtime() ! ------------------------------------------ ! Write (*,*) "a = ", a Write (*,*) "The wall time is ", t1-t0, "s" Write (*,*) "The CPU

Xcode C++ omp.h file not found

谁说胖子不能爱 提交于 2021-02-10 06:22:34
问题 I’m trying to include openmp to my Xcode C++ project. I have changed my compiler in Xcode to LLVM GCC 4.2, added ”-fopenmp” as a CFlag and enabled OpenMP support in xcode as well. But it still says ”‘omp.h’ file not found” and i am unable to build the project. Does anyone know what could be wrong and how to fix this? 回答1: I have had the same problem. Try going to the project navigator using the panel at the left side. Select your project (the one with the blue icon), and a different main

Spreading OpenMP threads among NUMA nodes

陌路散爱 提交于 2021-02-10 04:16:51
问题 I have a matrix spread among four NUMA-node local memories. Now I want to open 4 threads, each one on a CPU corresponding to a different NUMA-node, so that each thread can access its part of the matrix as fast as possible. OpenMP has the "proc_bind(spread)" option, but it puts the threads on the same NUMA-node, but on far apart CPUs. How can I force the threads to bind to different NUMA nodes? Or, if that is not possible: When I use all cores on all nodes (256 threads total), I know how to

Using the script variable OMP_NUM_THREADS in the program source files

南笙酒味 提交于 2021-02-09 08:59:50
问题 If I'm running C++ code on a cluster, is it possible to use the value of OMP_NUM_THREADS in my program? For example, suppose I have two .cpp files main.cpp and func.cpp, where func.cpp is written in parallel using OpenMP. I want to be able to define the number of threads once (in the script below) and not have to define it again in func.cpp. #!/bin/bash #PBS -S /bin/bash #PBS -l walltime=00:10:00 #PBS -l select=1:ncpus=4:mem=2gb #PBS -q QName #PBS -N Name #PBS -o Results/output.txt #PBS -e

Using the script variable OMP_NUM_THREADS in the program source files

半城伤御伤魂 提交于 2021-02-09 08:59:06
问题 If I'm running C++ code on a cluster, is it possible to use the value of OMP_NUM_THREADS in my program? For example, suppose I have two .cpp files main.cpp and func.cpp, where func.cpp is written in parallel using OpenMP. I want to be able to define the number of threads once (in the script below) and not have to define it again in func.cpp. #!/bin/bash #PBS -S /bin/bash #PBS -l walltime=00:10:00 #PBS -l select=1:ncpus=4:mem=2gb #PBS -q QName #PBS -N Name #PBS -o Results/output.txt #PBS -e