openslide

Openslide-python import error

安稳与你 提交于 2020-01-13 17:10:13
问题 I receive the following error when running import openslide from inside python terminal <code>Traceback (most recent call last): File "<stdin>", line 1, in <module> File "C:\dev_res\python\python2_713\lib\site-packages\openslide\__init__.py", line 29, in <module> from openslide import lowlevel File "C:\dev_res\python\python2_713\lib\site-packages\openslide\lowlevel.py", line 41, in <module> _lib = cdll.LoadLibrary('libopenslide-0.dll') File "C:\dev_res\python\python2_713\lib\ctypes\__init__

openslide python import show:windows error

余生颓废 提交于 2019-12-24 08:32:12
问题 I am using python 2.7 win 32 I need to install openslide in python in below page show Install openslide http://openslide.org/download/ which item download for windows. i tried every thing.and pip installation the error shows below import openslide Traceback (most recent call last): File "<pyshell#2>", line 1, in <module> import openslide File "C:\Python27\lib\site-packages\openslide\__init__.py", line 29, in >>>> <module> from openslide import lowlevel File "C:\Python27\lib\site-packages

Convert image array to original svs format

冷暖自知 提交于 2019-12-11 16:55:02
问题 I'm trying to apply a foreground extraction to a SVS image (Whole Slide Image) usign OpenSlide library. First, I converted my image to an array to work on my foreground extraction: image = np.asarray(oslIm.read_region((0, 0), level, oslIm.level_dimensions[level]), dtype=np.uint8)[:, :, 0:3] After that I generated my mask, which I applied to my converted image: plt.imshow(image * final_mask[:, :, np.newaxis]) plt.xticks([]) plt.yticks([]) plt.savefig("./masks/ResultingImage.png", format='png',

how to convert dzi files to multi-tile pyramidal tiff format

你说的曾经没有我的故事 提交于 2019-12-04 05:58:38
问题 In reference to the answer (how to convert dzi (deep zoom) files to full image) I am a noob on this topic, please correct if I am wrong. I am trying to create a multi-tiled tiff from .dzi (deep zoom image) format, how I am doing is: (i) Pick the max level folder. (ii) Vertically Stitch all the n columns of m rows (m_n.jpeg, I am referring to the images saved in this format) as png images. So they are occupying quite a considerable amount of space. (iii) Finally, I horizontally merge all these