openmp

cython openmp single, barrier

点点圈 提交于 2019-12-24 03:42:54
问题 I'm trying to use openmp in cython. I need to do two things in cython: i) use the #pragma omp single{} scope in my cython code. ii) use the #pragma omp barrier{} Does anyone know how to do this in cython? Here are more details. I have a nogil cdef-function my_fun() which I call in an omp for-loop: from cython.parallel cimport prange cimport openmp cdef int i with nogil: for i in prange(10,schedule='static', num_threads=10): my_func(i) Inside my_func I need to place a barrier to wait for all

False sharing in OpenMP loop array access

旧时模样 提交于 2019-12-24 03:21:05
问题 I would like to take advantage of OpenMP to make my task parallel. I need to subtract the same quantity to all the elements of an array and write the result in another vector. Both arrays are dynamically allocated with malloc and the first one is filled with values from a file. Each element is of type uint64_t . #pragma omp parallel for for (uint64_t i = 0; i < size; ++i) { new_vec[i] = vec[i] - shift; } Where shift is the fixed value I want to remove from every element of vec . size is the

Why does calculation with OpenMP take 100x more time than with a single thread?

≯℡__Kan透↙ 提交于 2019-12-24 01:27:45
问题 I am trying to test Pi calculation problem with OpenMP. I have this code: #pragma omp parallel private(i, x, y, myid) shared(n) reduction(+:numIn) num_threads(NUM_THREADS) { printf("Thread ID is: %d\n", omp_get_thread_num()); myid = omp_get_thread_num(); printf("Thread myid is: %d\n", myid); for(i = myid*(n/NUM_THREADS); i < (myid+1)*(n/NUM_THREADS); i++) { //for(i = 0; i < n; i++) { x = (double)rand()/RAND_MAX; y = (double)rand()/RAND_MAX; if (x*x + y*y <= 1) numIn++; } printf("Thread ID is:

OpenMP overhead

女生的网名这么多〃 提交于 2019-12-24 00:52:35
问题 I have parallelized image convolution and lu factorization using OpenMP and Intel TBB. I am testing it on 1-8 cores. But when I try it on 1 core in OPenMP and TBB by specifying one thread using set_num_threads(1), and task_scheduler_init InitTBB(1) respectively for example; TBB performance shows some small degradation compared to sequential code due to TBB overhead, but surprisingly OpenMP doesnt show any overhead on single core and performs exactly equal to sequential code (using Intel O3

What is the usage of reduction in openmp?

人盡茶涼 提交于 2019-12-24 00:46:04
问题 I have this piece of code that is parallelized. int i,n; double area,pi,x; area=0.0; #pragma omp parallel for private(x) reduction (+:area) for(i=0; i<n; i++){ x= (i+0.5)/n; area+= 4.0/(1.0+x*x); } pi = area/n; It is said that the reduction will remove the race condition that could happen if we didn't use a reduction. Still I'm wondering do we need to add lastprivate for area since its used outside the parallel loop and will not be visible outside of it. Else does the reduction cover this as

OpenMP Parallelizing for loop with map

拈花ヽ惹草 提交于 2019-12-24 00:41:41
问题 I am trying to parallelize a for-loop which scans std::map. Below is my toy program: #include <iostream> #include <cstdio> #include <map> #include <string> #include <cassert> #include <omp.h> #define NUM 100000 using namespace std; int main() { omp_set_num_threads(16); int realThreads = 0; string arr[] = {"0", "1", "2"}; std::map<int, string> myMap; for(int i=0; i<NUM; ++i) myMap[i] = arr[i % 3]; string is[NUM]; #pragma omp parallel for for(map<int, string>::iterator it = myMap.begin(); it !=

Shared variables in OpenMP

橙三吉。 提交于 2019-12-24 00:38:54
问题 I have a very basic question (maybe stupid) regarding shared variables in OpenMP. Consider the following code: void main() { int numthreads; #pragma omp parallel default(none) shared(numthreads) { numthreads = omp_get_num_threads(); printf("%d\n",numthreads); } } Now the value of numthreads is the same for all threads. is there a possibility that since various threads are writing the same value to the same variable , the value might get garbled/mangled ? Or is this operation on a primitive

Reduction and collapse clauses in OMP have some confusing points

穿精又带淫゛_ 提交于 2019-12-24 00:37:23
问题 Both of reduction and collapse clauses in OMP confuses me, some points raised popped into my head Why reduction doesn't work with minus? as in the limitation listed here Is there any work around to achieve minus? How does a unary operator work, i.e. x++ or x--? is the -- or ++ applied to each partial result? or only once at the creation of the global result? both cases are totally different. About the collapse.. could we apply collapse on a nested loops but have some lines of code in between

OpenMP and File I/O

南笙酒味 提交于 2019-12-24 00:20:02
问题 I'm doing some time trials on my code, and logically it seems really easy to parallelize with OpenMP as each trial is independent of the others. As it stands, my code looks something like this: for(int size = 30; size < 50; ++size) { #pragma omp parallel for for(int trial = 0; trial < 8; ++trial) { time_t start, end; //initializations time(&start); //perform computation time(&end); output << size << "\t" << difftime(end,start) << endl; } output << endl; } I have a sneaking suspicion that this

Compiling with OpenMP results in a memory leak

青春壹個敷衍的年華 提交于 2019-12-23 21:30:52
问题 According to valgrind, I can induce a memory leak when compiling a simple hello-world program with OpenMP. This doesn't make sense, because the hello-world program does not intentionally use any OpenMP functionality. Suppose the program below is named hi.c and compiled according to $ gcc -o hi hi.c GCC version 4.8.3 #include <stdio.h> int main( void ) { printf( "hi\n" ); return 1; } We should expect a leak report from valgrind to verify the obvious: there are no leaks. My observations agree