heatmaply

问题 Does anyone have a method to adorn an R corrplot correlation plot with a dendrogram? 回答1: The closest solution I know of is to use a heatmap on a correlation matrix, for example you could also use gplots::heatmap.2. Here is how to do it using the heatmaply R package, which also offers an interactive interface where you can zoom-in and get a tooltip when hovering over the cells: # for the first time: # install.packages("heatmaply") library(heatmaply) my_cor <- cor(mtcars) heatmaply_cor(my_cor)

问题 Does anyone have a method to adorn an R corrplot correlation plot with a dendrogram? 回答1: The closest solution I know of is to use a heatmap on a correlation matrix, for example you could also use gplots::heatmap.2. Here is how to do it using the heatmaply R package, which also offers an interactive interface where you can zoom-in and get a tooltip when hovering over the cells: # for the first time: # install.packages("heatmaply") library(heatmaply) my_cor <- cor(mtcars) heatmaply_cor(my_cor)

问题 I am using the R heatmaply package to produce interactive heatmaps. I like the software, but I would like to get from it the same clustering (ordering of rows and columns) I get using the pheatmap package. Therefore, I would like the two commands to produce the same ouput: heatmaply (scale (mtcars)) pheatmap (scale (mtcars)) Is there a way to do this? Thanks in advance. Arturo P.S. I recently asked another similar question about the color output, i.e., not clustering, output, that was

问题 I am using the R heatmaply package to produce interactive heatmaps. I like the software, but I would like to get from it the same color output I get using the pheatmap package. Therefore, I would like the two commands to produce the same ouput: heatmaply (scale (mtcars)) pheatmap (scale (mtcars)) Is there a way to do this? Thanks in advance. Arturo 回答1: You can use formals() to get the default color argument of pheatmap() . formals(pheatmap)$color # colorRampPalette(rev(brewer.pal(n = 7, name

问题 I am using the R heatmaply package to produce interactive heatmaps. I like the software, but I would like to get from it the same color output I get using the pheatmap package. Therefore, I would like the two commands to produce the same ouput: heatmaply (scale (mtcars)) pheatmap (scale (mtcars)) Is there a way to do this? Thanks in advance. Arturo 回答1: You can use formals() to get the default color argument of pheatmap() . formals(pheatmap)$color # colorRampPalette(rev(brewer.pal(n = 7, name

问题 I am using the R heatmaply package to produce interactive heatmaps. I like the software, but I would like to get from it the same color output I get using the pheatmap package. Therefore, I would like the two commands to produce the same ouput: heatmaply (scale (mtcars)) pheatmap (scale (mtcars)) Is there a way to do this? Thanks in advance. Arturo 回答1: You can use formals() to get the default color argument of pheatmap() . formals(pheatmap)$color # colorRampPalette(rev(brewer.pal(n = 7, name