R cluster with Tanimoto/Jaccard
问题 Input file is Mydata <- read.table(con <- textConnection(' gene treatment1 treatment2 treatment3 aaa 1 0 1 bbb 1 1 1 ccc 0 0 0 eee 0 1 0 '), header=TRUE) close(con) Mydata is gene treatment1 treatment2 treatment3 1 aaa 1 0 1 2 bbb 1 1 1 3 ccc 0 0 0 4 eee 0 1 0 In order to built cluster, I have done d <- dist(mydata, method = "euclidean") fit <- hclust(d, method="ward") plot(fit) I got the cluster based on "euclidean" distance. In my previous message in stackoverflow How to use R to compute