cluster-analysis

I have more than 400 thousand cars GPS locations, like: [ 25.41452217, 37.94879532], [ 25.33231735, 37.93455887], [ 25.44327736, 37.96868896], ... I need to make spatial clustering with the distance between points <= 3 meters. I tried to use DBSCAN , but it seems that it is not working for geo(longitude, latitude) . Also, I do not know the number of clusters. You can use pairwise_distances to calculate Geo distance from latitude / longitude and then pass the distance matrix into DBSCAN, by specifying metric='precomputed'. To calculate the distance matrix: from sklearn.metrics.pairwise import

I have a distance matrix for ~20 elements, which I am using to do hierarchical clustering in R. Is there a way to label elements with a plot or a picture instead of just numbers, characters, etc? So, instead of the leaf nodes having numbers, it'd have small plots or pictures. Here is why I'm interested in this functionality. I have 2-D scatterplots like these (color indicates density) http://www.pnas.org/content/108/51/20455/F2.large.jpg (Note that this is not my own data) I have to analyze hundreds of such 2-D scatter plots, and am trying out various distance metrics which I'm feeding on to

I have many 3D data points, and I wish to find 'connected components' in this graph. This is where clusters are formed that exhibit the following properties: Each cluster contains points all of which are at most distance from another point in the cluster. All points in two distinct clusters are at least distance from each other. This problem is described in the question and answer here . Is there a MATLAB implementation of such an algorithm built-in or available on the FEX? Simple searches have not thrown up anything useful. Amro Perhaps a density-based clustering algorithm can be applied in

Hi I was wondering when you cluster data on the figure screen is there a way to show which rows the data points belong to when you scroll over them? From the picture above I was hoping there would be a way in which if I select or scroll over the points that I could tell which row it belonged to. Here is the code: %% dimensionality reduction columns = 6 [U,S,V]=svds(fulldata,columns); %% randomly select dataset rows = 1000; columns = 6; %# pick random rows indX = randperm( size(fulldata,1) ); indX = indX(1:rows); %# pick random columns indY = randperm( size(fulldata,2) ); indY = indY(1:columns)

I have a web data that looks similar to the sample below. It simply has the user and binary value for whether that user cliked on a particular link within a website. I wanted to do some clustering of this data. My main goal is to find similar users based on their online behaviour. What is a good clustering alorithm for this? I have tried k-means which does not work well with binary data. I have also tried spherical k-means skmeans() . I wanted to do a sum of squared error scree plot, but I could not figure out how to get SSE from skmeans. User link1 link2 link3 link4 abc1 0 1 1 1 abc2 1 0 1 0

Closed. This question is off-topic . It is not currently accepting answers. Want to improve this question? Update the question so it's on-topic for Stack Overflow. Closed 4 years ago . i am currently writing a python script to find the similarity between documents.I have already calculated the similarities score for each document pairs and store them in dictionaries. It looks something like this: {(8328, 8327): 1.0, (8313, 8306): 0.12405229825691289, (8329, 8328): 1.0, (8322, 8321): 0.99999999999999989, (8328, 8329): 1.0, (8306, 8316): 0.12405229825691289, (8320, 8319): 0.67999999999999989,

I was working on clustering a lot of data, which has two different clusters. The first type is a 6-dimensional cluster whereas the second type is a 12-dimensional cluster. For now I have decided to use kmeans (as it seems the most intuitive clustering algorithm for the start). The question is how can I map these clusters on a 2d plot so that I can infer whether kmeans is working or not. I would like to use matplotlib, but any other python package is fine. Cluster 1 is a cluster made up of these data types (int,float,float,int,float,int) Cluster 2 is a cluster made up of 12 float types. Trying