How to use Paramiko getfo to download file from SFTP server to memory to process it

问题

I am trying to download a CSV file (in-memory) from SFTP using Paramiko and import it into a pandas dataframe.

transport = paramiko.Transport((server, 22))
transport.connect(username=username, password=password)
sftp = paramiko.SFTPClient.from_transport(transport)

with open(file_name, 'wb') as fl:
    sftp.getfo(file_name, fl, callback=printTotals)
    df = pd.read_csv(fl, sep=' ')

The code below fails, telling me:

OSError: File is not open for reading

I assume that I need some kind of buffer or file like object for fl instead, since open needs a file. I am relatively new to all of this, so I would be happy it if someone could help.

回答1:

A simple solution that still allows you to use progress callback is:

Use BytesIO file-like object to store a downloaded file to memory;
You have to seek file pointer back to file start after downloading it, before you start reading it.

with io.BytesIO() as fl:
    sftp.getfo(file_name, fl, callback=printTotals)
    fl.seek(0)
    df = pd.read_csv(fl, sep=' ')

Though with this solution, you will end up having the file loaded to memory twice.

Better solution is to implement a file-like object. It will even allow you to download and parse the file at the same time.

class FileWithProgress:

    def __init__(self, fl):
        self.fl = fl
        self.size = fl.stat().st_size
        self.p = 0

    def read(self, blocksize):
        r = self.fl.read(blocksize)
        self.p += len(r)
        print(str(self.p) + " of " + str(self.size)) 
        return r

And use it like:

with sftp.open(file_name, "rb") as fl:
    fl.prefetch()
    df = pd.read_csv(FileWithProgress(fl), sep=' ')

For the SFTPFile.prefetch call, refer to:
Reading file opened with Python Paramiko SFTPClient.open method is slow.

回答2:

What I ended up doing was a simple version of that, unfortunately without a callback for the progress, I also needed rb for reading:

with sftp.open(file_name, 'rb') as fl:
        df = pd.read_csv(fl, sep=' ')

Anyway, Martin's answer is what I was looking for!

来源：https://stackoverflow.com/questions/50531631/how-to-use-paramiko-getfo-to-download-file-from-sftp-server-to-memory-to-process

标签

python

pandas

sftp

paramiko