parallel-processing

Error in R parallel:Error in checkForRemoteErrors(val) : 2 nodes produced errors; first error: cannot open the connection

旧巷老猫 提交于 2021-01-05 06:59:24
问题 I wrote a function to run R parallel, but it doesn't seem to work. The code is ''' rm(list=ls()) square<-function(x){ library(Iso) y=ufit(x,lmode<-2,x<-c(1:length(x)),type="b")[[2]] return(y) } num<-c(1,2,1,4) cl <- makeCluster(getOption("cl.cores",2)) clusterExport(cl,"square") results<-parLapply(cl,num,square) stopCluster(cl) ''' and the error is: Error in checkForRemoteErrors(val) : 2 nodes produced errors; first error: cannot open the connection I think a possible reason is that I used

How to call global function from the `parLapply` function?

限于喜欢 提交于 2021-01-05 06:35:58
问题 How to call global function speedDistribution from the parLapply function? speedDistribution <- function(speed) { return(quantile(speed, seq(0.2, 1, by = 0.20))) } estimateFeatures <- function(trips,target) { cl <- makeCluster( 4 ) features = NULL features = parLapply(cl, 1:length(trips), function(z){ z <- as.data.frame(z) speed <- 3.6 * sqrt(diff(z$x)^2 + diff(z$y)^2) s <- speed[!speed > mean(speed) + sd(speed) * 5] features = c(speedDistribution(s),target) return(cbind(features, rep(z, nrow

How to call global function from the `parLapply` function?

倖福魔咒の 提交于 2021-01-05 06:33:31
问题 How to call global function speedDistribution from the parLapply function? speedDistribution <- function(speed) { return(quantile(speed, seq(0.2, 1, by = 0.20))) } estimateFeatures <- function(trips,target) { cl <- makeCluster( 4 ) features = NULL features = parLapply(cl, 1:length(trips), function(z){ z <- as.data.frame(z) speed <- 3.6 * sqrt(diff(z$x)^2 + diff(z$y)^2) s <- speed[!speed > mean(speed) + sd(speed) * 5] features = c(speedDistribution(s),target) return(cbind(features, rep(z, nrow

How to use global variables with Ray

让人想犯罪 __ 提交于 2021-01-01 00:05:30
问题 I have a script that looks like a more complicated version of this: import ray var1 = 0 var2 = 0 @ray.remote def create(n): global var1 global var2 for i in range(10): var1 += 1 var2 += 1 def create2(): tasks = [create.remote(i) for i in range(20)] ray.get(tasks) create2() This errors because Ray does not allow global variables to be used in the traditional way. How can I get around this? 回答1: Q : "How can I get around this?" One solution would be to create a method .add1() for either of

How to set seeds when using parallel package in R

老子叫甜甜 提交于 2020-12-31 20:15:35
问题 I am currently using the parallel package in R and I am trying to make by work reproducible by setting seeds. However, if you set the seed before creating the cluster and performing the tasks you want in parallel, for some reason, it doesn't make it reproducible. I think I need to set the seed for each core when I make the cluster. I have made a small example here to illustrate my problem: library(parallel) # function to generate 2 uniform random numbers runif_parallel <- function() { # make

How to set seeds when using parallel package in R

南笙酒味 提交于 2020-12-31 20:14:17
问题 I am currently using the parallel package in R and I am trying to make by work reproducible by setting seeds. However, if you set the seed before creating the cluster and performing the tasks you want in parallel, for some reason, it doesn't make it reproducible. I think I need to set the seed for each core when I make the cluster. I have made a small example here to illustrate my problem: library(parallel) # function to generate 2 uniform random numbers runif_parallel <- function() { # make

How to set seeds when using parallel package in R

冷暖自知 提交于 2020-12-31 20:10:31
问题 I am currently using the parallel package in R and I am trying to make by work reproducible by setting seeds. However, if you set the seed before creating the cluster and performing the tasks you want in parallel, for some reason, it doesn't make it reproducible. I think I need to set the seed for each core when I make the cluster. I have made a small example here to illustrate my problem: library(parallel) # function to generate 2 uniform random numbers runif_parallel <- function() { # make

How to set seeds when using parallel package in R

℡╲_俬逩灬. 提交于 2020-12-31 20:09:13
问题 I am currently using the parallel package in R and I am trying to make by work reproducible by setting seeds. However, if you set the seed before creating the cluster and performing the tasks you want in parallel, for some reason, it doesn't make it reproducible. I think I need to set the seed for each core when I make the cluster. I have made a small example here to illustrate my problem: library(parallel) # function to generate 2 uniform random numbers runif_parallel <- function() { # make

How to set seeds when using parallel package in R

…衆ロ難τιáo~ 提交于 2020-12-31 20:09:09
问题 I am currently using the parallel package in R and I am trying to make by work reproducible by setting seeds. However, if you set the seed before creating the cluster and performing the tasks you want in parallel, for some reason, it doesn't make it reproducible. I think I need to set the seed for each core when I make the cluster. I have made a small example here to illustrate my problem: library(parallel) # function to generate 2 uniform random numbers runif_parallel <- function() { # make

How to set seeds when using parallel package in R

橙三吉。 提交于 2020-12-31 20:07:49
问题 I am currently using the parallel package in R and I am trying to make by work reproducible by setting seeds. However, if you set the seed before creating the cluster and performing the tasks you want in parallel, for some reason, it doesn't make it reproducible. I think I need to set the seed for each core when I make the cluster. I have made a small example here to illustrate my problem: library(parallel) # function to generate 2 uniform random numbers runif_parallel <- function() { # make