parallel-processing

How to install/compile pip requirements in parallel (make -j equivalent)

随声附和 提交于 2021-01-23 06:18:44
问题 I have a lot of packages to install in my pip requirement and I'd like to process them in parallell. I know that, for example, that if I want n parallel jobs from make I have to write make -j n ; is there an equivalent command for pip requirements? Thanks! 回答1: Sometimes pip uses make to build dependencies. If before it starts you set MAKEFLAGS like: export MAKEFLAGS="-j$(nproc)" pip install -r requirements.txt This may help building native dependencies. Note: nproc resovles as the number of

How to install/compile pip requirements in parallel (make -j equivalent)

我与影子孤独终老i 提交于 2021-01-23 06:15:23
问题 I have a lot of packages to install in my pip requirement and I'd like to process them in parallell. I know that, for example, that if I want n parallel jobs from make I have to write make -j n ; is there an equivalent command for pip requirements? Thanks! 回答1: Sometimes pip uses make to build dependencies. If before it starts you set MAKEFLAGS like: export MAKEFLAGS="-j$(nproc)" pip install -r requirements.txt This may help building native dependencies. Note: nproc resovles as the number of

Julia - Parallelism for Reading a Large file

℡╲_俬逩灬. 提交于 2021-01-21 10:17:05
问题 In Julia v1.1, assume that I have a very large text file (30GB) and I want parallelism (multi-threads) to read eachline, how can I do ? This code is an attempt to do this after checking Julia's documentation on multi-threading, but it's not working at all open("pathtofile", "r") do file # Count number of lines in file seekend(file) fileSize = position(file) seekstart(file) # skip nseekchars first characters of file seek(file, nseekchars) # progress bar, because it's a HUGE file p = Progress

Julia - Parallelism for Reading a Large file

让人想犯罪 __ 提交于 2021-01-21 10:16:56
问题 In Julia v1.1, assume that I have a very large text file (30GB) and I want parallelism (multi-threads) to read eachline, how can I do ? This code is an attempt to do this after checking Julia's documentation on multi-threading, but it's not working at all open("pathtofile", "r") do file # Count number of lines in file seekend(file) fileSize = position(file) seekstart(file) # skip nseekchars first characters of file seek(file, nseekchars) # progress bar, because it's a HUGE file p = Progress

Julia - Parallelism for Reading a Large file

為{幸葍}努か 提交于 2021-01-21 10:16:34
问题 In Julia v1.1, assume that I have a very large text file (30GB) and I want parallelism (multi-threads) to read eachline, how can I do ? This code is an attempt to do this after checking Julia's documentation on multi-threading, but it's not working at all open("pathtofile", "r") do file # Count number of lines in file seekend(file) fileSize = position(file) seekstart(file) # skip nseekchars first characters of file seek(file, nseekchars) # progress bar, because it's a HUGE file p = Progress

Fuzzy merging in R - seeking help to improve my code

一个人想着一个人 提交于 2021-01-20 19:53:24
问题 Inspired by the experimental fuzzy_join function from the statar package I wrote a function myself which combines exact and fuzzy (by string distances) matching. The merging job I have to do is quite big (resulting into multiple string distance matrices with a little bit less than one billion cells) and I had the impression that the fuzzy_join function is not written very efficiently (with regard to memory usage) and the parallelization is implemented in a weird manner (the computation of the

Fuzzy merging in R - seeking help to improve my code

冷暖自知 提交于 2021-01-20 19:51:36
问题 Inspired by the experimental fuzzy_join function from the statar package I wrote a function myself which combines exact and fuzzy (by string distances) matching. The merging job I have to do is quite big (resulting into multiple string distance matrices with a little bit less than one billion cells) and I had the impression that the fuzzy_join function is not written very efficiently (with regard to memory usage) and the parallelization is implemented in a weird manner (the computation of the

Fuzzy merging in R - seeking help to improve my code

那年仲夏 提交于 2021-01-20 19:50:53
问题 Inspired by the experimental fuzzy_join function from the statar package I wrote a function myself which combines exact and fuzzy (by string distances) matching. The merging job I have to do is quite big (resulting into multiple string distance matrices with a little bit less than one billion cells) and I had the impression that the fuzzy_join function is not written very efficiently (with regard to memory usage) and the parallelization is implemented in a weird manner (the computation of the

bitparallel weighted Levenshtein distance

僤鯓⒐⒋嵵緔 提交于 2021-01-07 01:32:07
问题 I am using a weighted Levenshtein distance with the following costs: insertion: 1 deletion: 1 replacement: 2 As pointed out by wildwasser in a comment, this means, that a substitution is treated as an insertion and a deletion. So substitutions could be avoided by the algorithm. For the normal implementation with a cost of 1 for each operation there are multiple bitparallel implementations like e.g. Myers/Hyyrö: static const uint64_t masks[64] = { 0x0000000000000001, 0x0000000000000003,

Error in R parallel:Error in checkForRemoteErrors(val) : 2 nodes produced errors; first error: cannot open the connection

独自空忆成欢 提交于 2021-01-05 06:59:44
问题 I wrote a function to run R parallel, but it doesn't seem to work. The code is ''' rm(list=ls()) square<-function(x){ library(Iso) y=ufit(x,lmode<-2,x<-c(1:length(x)),type="b")[[2]] return(y) } num<-c(1,2,1,4) cl <- makeCluster(getOption("cl.cores",2)) clusterExport(cl,"square") results<-parLapply(cl,num,square) stopCluster(cl) ''' and the error is: Error in checkForRemoteErrors(val) : 2 nodes produced errors; first error: cannot open the connection I think a possible reason is that I used