pandoc

Add markers and hyperlinks for citations in pandoc

由 倾然丶 夕夏残阳落幕 提交于 2019-12-14 03:44:13
问题 I put references in a yaml metadata-header: references: - id: fenner2012a title: One-click science marketing author: - family: Fenner given: Martin ... (described here: http://johnmacfarlane.net/pandoc/README.html#extension-citations) and I can cite this reference with See [@fenner2012a]... . This will create an output in the pdf like this: See ("One-click science marketing")... with no hyperlink on the reference. Instead of the title I want to have auto-incremented number: See [1] with [1]

How do I produce R package vignettes in multiple formats?

由 末鹿安然 提交于 2019-12-14 03:40:39
问题 I use knitr and rmarkdown to write vignettes for R packages. Thanks to the magic of pandoc it is easy to turn these documents into a variety of formats. I would like to take advantage of this by offering vignettes as both HTML and PDF. There is support from rmarkdown to specify parameters for multiple output formats in the documents metadata block. For example, I might have something like this: output: html_document: standalone: true smart: true normalize: true toc: true highlight: tango self

error 43 in pandoc: render Rmd with rmarkdown include LaTeX qtree

由 自古美人都是妖i 提交于 2019-12-14 02:12:08
问题 I am trying to produce a tree diagram in a Rmd file I expect to look like this: Using rmarkdown 's render function. But get an error 43 I do not know how to interpret. How can I get the pdf to render? What's causing the error? Rmd file --- title: "testtree" header-includes: - \usepackage{qtree} output: pdf_document --- \Tree [.S [.NP LaTeX ] [.VP [.V is ] [.NP fun ] ] ] Success Error message > rmarkdown::render("testtree.Rmd", "all") processing file: testtree.Rmd |............................

Pandoc for generating html file not using RStudio

由 不问归期 提交于 2019-12-14 01:04:16
问题 I'd like to generate html file via script below which is a part of complex source code but I don't want to install RStudio on users machine. I'm using pandoc available at: pandoc from github and the reference for path to this pandoc file is used in Sys.setenv: "C:/Users/username/AppData/Local/Pandoc". If I use RSTUDIO_PANDOC in Sys.setenv command, everything works fine in my script below but I'm just confused if RSTUDIO_PANDOC in Sys.setenv command uses default RStudio pandoc file which I don

Error when knitting github_document: pandoc document conversion failed with error 67

由 不羁的心 提交于 2019-12-14 01:03:59
问题 I'm generating a README.md GitHub page from a Rmd file. It was generated correctly a week ago but now it's throwing the following error: "C:/Program Files/RStudio/bin/pandoc/pandoc" +RTS -K512m -RTS README.md --to html --from markdown_github --output README.html --standalone --self-contained --highlight-style pygments --template "C:\Users\E\Documents\R\win-library\3.3\rmarkdown\rmarkdown\templates\github_document\resources\preview.html" --variable "github-markdown-css:C:\Users\E\Documents\R

Pandoc's environment cslreferences undefined when knitting RMarkdown to PDF in RStudio

由 ⅰ亾dé卋堺 提交于 2019-12-13 20:41:45
问题 Knitting (in RStudio version 1.2.1335) an RMarkdown file to PDF fails when trying to create citations (for pandoc version 2.8.0.1, and R version 3.6.1). (This does not happen when knitting to HTML, for example.) Here is a small rep. ex. in RMarkdown: --- title: "Rep. Ex. for 'LaTeX Error: Environment cslreferences undefined'" output: pdf_document: default bibliography: report.bib --- ```{r generate-bibtex-file, include=FALSE} knitr::write_bib(file = "report.bib", prefix = "") ``` # Used R

一个折腾的笔记系统

由 孤人 提交于 2019-12-13 18:43:55
【推荐】2019 Java 开发者跳槽指南.pdf(吐血整理) >>> 目标 快速收集 全文查找 支持 markdown 基本思路 使用 autohotkey 脚本来支持与 CintaNotes 一样的 Ctrl+F12 快速收集当前所选内容. 使用 gvim 自带的 vimgrep 命令来实现全文查找 使用 gvim 的 vim-pandoc 和 vim-pandoc-syntax 两个插件来支持 markdown , pandoc 工具来转换. 代码 快速收集 ^f12:: clipboard = ;首先清空剪贴板，使 ClipWait 命令能检测到文本何时被复制到了剪贴板中。 Send ^c ClipWait ;等待文本被复制到剪贴板中。 filename=e:\dknlnl\notes\万剑归宗\note-%A_Now%.mkd ;filename auther date FileAppend, `%note-%A_Now%`n, %filename% FileAppend, `%zhou512031123@gmail.com`n, %filename% FileAppend, `%%A_Now%`n, %filename% FileAppend, # note-%A_Now%`n`n, %filename% FileAppend, %clipboard%,

Is there a way to create a `README.md` file for GitHub that compiles from other `.md` files?

由 故事扮演 提交于 2019-12-13 16:33:16
问题 Is there a way to create a README.md file for GitHub that compiles from other .md files? For instance, let's say I have three files: repo/1.md , repo/2.md , and repo/3.md . I want to combine the files in this order to create repo/README.md . This SO question gives some help, but it's more than 2 years old and I'm thinking (hoping) there might be new ideas out there now. One answer suggests using Pandoc to compile .md files into outputting to html : pandoc *.md > markdown_book.html I tried

Pandoc IPython notebook loses some Mathjax

由 断了今生、忘了曾经 提交于 2019-12-13 05:02:22
问题 The problem I have is that I have an IPython notebook with some formulas written in MathJax. It is rendered fine in the notebook itself, but when I try to export it, most of my formula is gone! Here's a small reproducible example: I type $ \int \cfrac{ 2 p(\vec{x}) d\vec{x}} { \frac{1}{P(\omega_1 | \vec{x})} + \frac{1}{P(\omega_2 | \vec{x})} }$ It renders well inside the notebook: But when I click file -> print preview, what I get is just a lonely plus sign: In the sources I see this: <p>$ {

R markdown citation identifiers

由 狂风中的少年 提交于 2019-12-12 23:19:52
问题 R markdown allows specifying a bibliography file using the bibliography metadata field in a YAML metadata section. For example: --- title: "Sample Document" output: html_document bibliography: bibliography.bib --- The bibliography may have multiple formats in addition to BibTeX, such as RIS, EndNote, XML, ISI, MEDLINE, and others. The problem is that all usage examples use BibTeX. For example: @article{ahu61, author={Arrow, Kenneth J. and Leonid Hurwicz and Hirofumi Uzawa}, title={Constraint
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