How to implement a dynamic programming algorithms to TSP in Python?

Question

I want to solve the TSP problem using a dynamic programming algorithm in Python.The problem is:

• Input: cities represented as a list of points. For example, [(1,2), (0.3, 4.5), (9, 3)...]. The distance between cities is defined as the Euclidean distance.
• Output: the minimum cost of a traveling salesman tour for this instance, rounded down to the nearest integer.

And the pseudo-code is:

Let A = 2-D array, indexed by subsets of {1, 2, ,3, ..., n} that contains 1 and destinations j belongs to {1, 2, 3,...n}
1. Base case:
2.          if S = {0}, then A[S, 1] = 0;
3.          else, A[S, 1] = Infinity.
4.for m = 2, 3, ..., n:   // m = subproblem size
5.    for each subset of {1, 2,...,n} of size m that contains 1:
6.        for each j belongs to S and j != 1:
7.            A[S, j] = the least value of A[S-{j},k]+the distance of k and j for every k belongs to S that doesn't equal to j
8.Return the least value of A[{1,2..n},j]+the distance between j and 1 for every j = 2, 3,...n.

My confusions are:

How to index a list using subset, that is how to implement line 5 in the pseudo-code efficiently.

Answer 1

You can encode sets as integers: i'th bit of the integer will represent the state of i'th city (i.e. do we take it in the subset or not).
For example, 35₁₀ = 100011₂ will represent cities {1, 2, 6}. Here I count from the rightmost bit, which represents city 1.

In order to index a list using such representation of a subset, you should create 2D array of length 2ⁿ:

# Assuming n is given.
A = [[0 for i in xrange(n)] for j in xrange(2 ** n)]

This comes from the fact that with n-bit integer you can represent every subset of {1, 2, ..., n} (remember, each bit corresponds to exactly one city).

This representation gives you a number of nice possibilities:

# Check whether some city (1-indexed) is inside subset.
if (1 << (i - 1)) & x:
    print 'city %d is inside subset!' % i

# In particular, checking for city #1 is super-easy:
if x & 1:
    print 'city 1 is inside subset!'

# Iterate over subsets with increasing cardinality:
subsets = range(1, 2 ** n)
for subset in sorted(subsets, key=lambda x: bin(x).count('1')):
    print subset, 
# For n=4 prints "1 2 4 8 3 5 6 9 10 12 7 11 13 14 15"

# Obtain a subset y, which is the same as x, 
# except city #j (1-indexed) is removed:
y = x ^ (1 << (j - 1))  # Note that city #j must be inside x.

This is how I would implement your pseudocode (warning: no testing was done):

# INFINITY and n are defined somewhere above.
A = [[INFINITY for i in xrange(n)] for j in xrange(2 ** n)]
# Base case (I guess it should read "if S = {1}, then A[S, 1] = 0",
because otherwise S = {0} is not a valid index to A, according to line #1)
A[1][1] = 0
# Iterate over all subsets:
subsets = range(1, 2 ** n)
for subset in sorted(subsets, key=lambda x: bin(x).count('1')):
    if not subset & 1:
        # City #1 is not presented.
        continue
    for j in xrange(2, n + 1):
        if not (1 << (j - 1)) & subset:
            # City #j is not presented.
            continue
        for k in xrange(1, n + 1):
            if k == j or not (1 << (k - 1)) & subset:
                continue
            A[subset][j] = min(A[subset][j], A[subset ^ (1 << (j - 1))][k] + get_dist(j, k))

Besides having all needed functionality to implement your pseudocode, this approach is going to be faster than with tuples\dicts.