[ERROR]Native table performance schema has the wrong structure

Question

150814  9:09:14 [ERROR] Native table 'performance_schema'.'events_waits_current' has the wrong structure
150814  9:09:14 [ERROR] Native table 'performance_schema'.'events_waits_history' has the wrong structure
150814  9:09:14 [ERROR] Native table 'performance_schema'.'events_waits_history_long' has the wrong structure
150814  9:09:14 [ERROR] Native table 'performance_schema'.'setup_consumers' has the wrong structure
150814  9:09:14 [ERROR] Native table 'performance_schema'.'setup_instruments' has the wrong structure
150814  9:09:14 [ERROR] Native table 'performance_schema'.'setup_timers' has the wrong structure
150814  9:09:14 [ERROR] Native table 'performance_schema'.'performance_timers' has the wrong structure
150814  9:09:14 [ERROR] Native table 'performance_schema'.'threads' has the wrong structure
150814  9:09:14 [ERROR] Native table 'performance_schema'.'events_waits_summary_by_thread_by_event_name' has the wrong structure
150814  9:09:14 [ERROR] Native table 'performance_schema'.'events_waits_summary_by_instance' has the wrong structure
150814  9:09:14 [ERROR] Native table 'performance_schema'.'events_waits_summary_global_by_event_name' has the wrong structure
150814  9:09:14 [ERROR] Native table 'performance_schema'.'file_summary_by_event_name' has the wrong structure
150814  9:09:14 [ERROR] Native table 'performance_schema'.'file_summary_by_instance' has the wrong structure
150814  9:09:14 [ERROR] Native table 'performance_schema'.'mutex_instances' has the wrong structure
150814  9:09:14 [ERROR] Native table 'performance_schema'.'rwlock_instances' has the wrong structure
150814  9:09:14 [ERROR] Native table 'performance_schema'.'cond_instances' has the wrong structure
150814  9:09:14 [ERROR] Native table 'performance_schema'.'file_instances' has the wrong structure
150814  9:09:14 [Note] /usr/libexec/mysqld: ready for connections.
Version: '5.5.44-cll-lve'  socket: '/var/lib/mysql/mysql.sock'  port: 3306  MySQL Community Server (GPL) by Atomicorp

Then I run

mysql_upgrade

It shows:

Looking for 'mysql' as: mysql

Looking for 'mysqlcheck' as: mysqlcheck

FATAL ERROR: Upgrade failed

Answer 1

It seems this happens after you have done upgrade. Simply restart mysql:

service mysql restart

and the error should now have disappeared.

Answer 2

If you're running MySQL on your local device, you need to upgrade your mysql and then restart:

Upgrade:

$ mysql_upgrade -u root  

Restart:

$ mysql.server restart

Answer 3

Windows7 Pro, Mysql 5.7, Java Tomcat

I attempted to update the mysql server from version 5.7.8 to version 5.7.18 using the Windows web updater available on Mysql.com. The new version installed, started as a service, but wouldn't serve anything including log in.

1. Using the Windows command box, change directory to C:\Program Files\MySQL\MySQL Server 5.7\bin

2. Type: mysql_upgrade --force -u root -p

3. Enter the password of the previous version that is being upgraded.

4. Restart the Mysql service at Windows > Start > Administrative Tools > Services

The Mysql server immediately started and connected to the Java Servlet container.

Answer 4

Same problem here

$ mysqldump -h localhost --lock-all-tables --set-gtid-purged=OFF -u root -p --socket=/var/run/mysqld/mysqld.sock --all-databases > dump.sql
mysqldump: Couldn't execute 'SHOW VARIABLES LIKE 'ndbinfo\_version'': Native table 'performance_schema'.'session_variables' has the wrong structure (1682)

Have you test a

$ mysql_upgrade -u root -p

or

$ mysql_upgrade --force -u root -p

Answer 5

mysqldump just add parameter like this: --skip-lock-tables

can avoid this error:

mysqldump: Couldn't execute 'SHOW VARIABLES LIKE 'ndbinfo\_version'': Native table 'performance_schema'.'session_variables' has the wrong structure (1682)