I have an installation of Tomcat 7 on windows to which I am deploying my app. I have a couple of JVM args that I need set for the applications running on the server. In sear
As I mentioned in the comment above, it looks like the WTP plugins do not call the startup scripts, but directly call on Tomcat through the java executable. Therefore, the VM arguments from eclipse are put directly on the command line, not stored in some config file such as setenv.bat, neither does it read from such a config file from startup. Therefore the two are completely separate in configuration.