Basic situation:
I am copying some NTFS disks in openSuSE. Each one is 2TB. When I do this, the system runs slow.
My guesses:
Ok, now that i know that your using rsync
and i could dig a bit more:
It seems that rsync is ineffective when used with tons of files at the same time, there's an entry in their FAQ, it's not a linux/cache problem, it's an rsync problem eating too much RAM.
Googling around someone recommended to split the syncing in multiple rsync invocations
Hope it helps.