Finding Combinations to the provided Sum value

Question

I have series of numbers like this

myvar = [57, 71, 87, 97, 99, 101, 103, 113, 114, 115, 128, 129, 131, 137, 147, 156, 163, 186]

Now I want

Answer 1

If you simply want a count of the number of combinations then use this:

aminoacid_masses = [57, 71, 87, 97, 99, 101, 103, 113, 114, 115, 128, 129, 131, 137, 147, 156, 163, 186]


def peptides(n, d):
    for m in aminoacid_masses:
        if n-m in d:
            d[n] = d.get(n,0)+d[n-m]
    return d


def pep_counter(M):
    dicc = {0:1}
    mn = min(aminoacid_masses)
    for i in range(M-mn+1):
        j = i+mn
        peptides(j,dicc)
    return dicc


# This line calls the routine and indexes the returned dict.  Both with the desired mass (the mass we want peptides to sum up to)
print(pep_counter(1024)[1024])

Answer 2

TL;DR:

Discuss different methods, best method is listed here for ease of access and was originally written by thefourtheye:

def subsets_with_sum(lst, target, with_replacement=False):
    x = 0 if with_replacement else 1
    def _a(idx, l, r, t):
        if t == sum(l): r.append(l)
        elif t < sum(l): return
        for u in range(idx, len(lst)):
            _a(u + x, l + [lst[u]], r, t)
        return r
    return _a(0, [], [], target)

note: the above method is modified with improvements from the original version below

---

Original Post:

Well - A quick and simple application of your data with some logic concludes that you have the correct answer:

# data
vals = [57, 71, 87, 97, 99, 101, 103, 113, 114, 115, 128, 129, 131, 137, 147, 156, 163, 186]
target = 270

Using itertools.combinations:

>>> from itertools import combinations
>>> [comb for i in range(1, 20) for comb in combinations(vals, i) if sum(comb) == target]
[(114, 156), (57, 99, 114)]

However, maybe you wanted to use combinations_with_replacement which lets values be used multiple times from the initial list as opposed to only once.

Using itertools.combinations_with_replacement:

>>> from itertools import combinations_with_replacement
>>> [comb for i in range(1, 20) for comb in combinations_with_replacement(vals, i) if sum(comb) == target]
>>>  # result takes too long ...

---

You can make it into a robust function:

def subsets_with_sum(lst, target, subset_lengths=range(1, 20), method='combinations'):   
    import itertools
    return [comb for i in subset_lengths for comb in
            getattr(itertools, method)(lst, i) if sum(comb) == target]

>>> subsets_with_sum(vals , 270)
[(114, 156), (57, 99, 114)]

---

Another method, provided by thefourtheye , it is much faster, and requires no imports:

def a(lst, target, with_replacement=False):
    def _a(idx, l, r, t, w):
        if t == sum(l): r.append(l)
        elif t < sum(l): return
        for u in range(idx, len(lst)):
            _a(u if w else (u + 1), l + [lst[u]], r, t, w)
        return r
    return _a(0, [], [], target, with_replacement)


>>> s = [57, 71, 87, 97, 99, 101, 103, 113, 114, 115, 128, 129, 131, 137, 147, 156, 163, 186]
>>> a(s, 270)
[[57, 99, 114], [114, 156]]
>>> a(s, 270, True)
[[57, 57, 57, 99], [57, 57, 156], [57, 71, 71, 71], [57, 99, 114], [71, 71, 128], [114, 156]]

---

Timing:

def a(lst, target, with_replacement=False):
    def _a(idx, l, r, t, w):
        if t == sum(l): r.append(l)
        elif t < sum(l): return
        for u in range(idx, len(lst)):
            _a(u if w else (u + 1), l + [lst[u]], r, t, w)
        return r
    return _a(0, [], [], target, with_replacement)

def b(lst, target, subset_lengths=range(1, 21), method='combinations'):   
    import itertools
    return [comb for i in subset_lengths for comb in
            getattr(itertools, method)(lst, i) if sum(comb) == target]

vals = [57, 71, 87, 97, 99, 101, 103, 113, 114, 115, 128, 129, 131, 137, 147, 156, 163, 186]

from timeit import timeit
print 'no replacement'
print timeit("a(vals, 270)", "from __main__ import vals, a", number=10)
print timeit("b(vals, 270)", "from __main__ import vals, b", number=10)
print 'with replacement'
print timeit("a(vals, 270, True)", "from __main__ import vals, a", number=10)
print timeit("b(vals, 270, method='combinations_with_replacement')", "from __main__ import vals, b", number=10)

Timing Output:

no replacement
0.0273933852733
0.683039054001
with replacement
0.0177899423427
... waited a long time ... no results ...

conclusion:

The new method (a) is at least 20 times faster.