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You will need to use canvg library for drawing this svg to a temporary canvas and then remove that canvas once you take the screenshot using html2canvas.
Here is the link for canvg : https://github.com/canvg/canvg
Try this:
//find all svg elements in $container
//$container is the jQuery object of the div that you need to convert to image. This div may contain highcharts along with other child divs, etc
var svgElements= $container.find('svg');
//replace all svgs with a temp canvas
svgElements.each(function () {
var canvas, xml;
canvas = document.createElement("canvas");
canvas.className = "screenShotTempCanvas";
//convert SVG into a XML string
xml = (new XMLSerializer()).serializeToString(this);
// Removing the name space as IE throws an error
xml = xml.replace(/xmlns=\"http:\/\/www\.w3\.org\/2000\/svg\"/, '');
//draw the SVG onto a canvas
canvg(canvas, xml);
$(canvas).insertAfter(this);
//hide the SVG element
this.className = "tempHide";
$(this).hide();
});
//...
//HERE GOES YOUR CODE FOR HTML2CANVAS SCREENSHOT
//...
//After your image is generated revert the temporary changes
$container.find('.screenShotTempCanvas').remove();
$container.find('.tempHide').show().removeClass('tempHide');