I see a lot of people in blog posts and here on SO either avoiding or advising against the usage of the Thread
class in recent versions of C# (and I mean of course
I've always used the Thread class when I need to keep count and control over the threads I've spun up. I realize I could use the threadpool to hold all of my outstanding work, but I've never found a good way to keep track of how much work is currently being done or what the status is.
Instead, I create a collection and place the threads in them after I spin them up - the very last thing a thread does is remove itself from the collection. That way, I can always tell how many threads are running, and I can use the collection to ask each what it's doing. If there's a case when I need to kill them all, normally you'd have to set some kind of "Abort" flag in your application, wait for every thread to notice that on its own and self-terminate - in my case, I can walk the collection and issue a Thread.Abort to each one in turn.
In that case, I haven't found a better way that working directly with the Thread class. As Eric Lippert mentioned, the others are just higher-level abstractions, and it's appropriate to work with the lower-level classes when the available high-level implementations don't meet your need. Just as you sometimes need to do Win32 API calls when .NET doesn't address your exact needs, there will always be cases where the Thread class is the best choice despite recent "advancements."