The kind of big science I do (particle physics) has a small number of large, long-running projects (ROOT and Geant4, for instance). These are developed mostly by actual programming professionals. Using processes that would be recognized by anyone else in the industry.
Then, each collaboration has a number of project-wide programs which are developed collaboratively under the direction of a small number of senior programming scientists. These use at least the basic tools (always version control, often some kind of bug tracking or automated builds).
Finally almost every scientist works on their own programs. Use of process on these programs is very spotty, and they often suffer from all the ills that others have discussed (short lifetimes, poor coding skills, no review, lots of serial maintainers, Not Invented Here Syndrome, etc. etc.). The only advantage that is available here compared to small group science, is that they work with the tools I talked about above, so there is something that you can point to and say "That is what you want to achieve.".
