how do you subset based on the number of observations of the levels of a factor variable? I have a dataset with 1,000,000 rows and nearly 3000 levels, and I want to subset out
I figured it out using the following, as there is no reason to do things twice:
function (df, column, threshold) {
size <- nrow(df)
if (threshold < 1) threshold <- threshold * size
tab <- table(df[[column]])
keep <- names(tab)[tab > threshold]
drop <- names(tab)[tab <= threshold]
cat("Keep(",column,")",length(keep),"\n"); print(tab[keep])
cat("Drop(",column,")",length(drop),"\n"); print(tab[drop])
str(df)
df <- df[df[[column]] %in% keep, ]
str(df)
size1 <- nrow(df)
cat("Rows:",size,"-->",size1,"(dropped",100*(size-size1)/size,"%)\n")
df[[column]] <- factor(df[[column]], levels=keep)
df
}