This part of my script is comparing each line of a file to find a preset string. If the string does NOT exist as a line in the file, it should append it to the end of the file.<
If we want to make just the minimal change to your code to get it working, all we need to do is switch the input redirection:
string=foobar
while read line
do
if [ "$string" == "$line" ]; then
islineinfile="yes"
fi
done <"$file"
if [ ! "$islineinfile" == yes ]; then
echo "$string" >> "$file"
fi
In the above, we changed cat "$file" | while do ...done to while do...done<"$file". With this one change, the while loop is no longer in a subshell and, consequently, shell variables created in the loop live on after the loop completes.
I believe that the whole of your script can be replaced with:
sed -i.bak '/^foobar$/H; ${x;s/././;x;t; s/$/\nfoobar/}' file*
The above adds line foobar to the end of each file that doesn't already have a line that matches ^foobar$.
The above shows file* as the final argument to sed. This will apply the change to all files matching the glob. You could list specific files individually if you prefer.
The above was tested on GNU sed (linux). Minor modifications may be needed for BSD/OSX sed.
awk -i inplace -v s="foobar" '$0==s{f=1} {print} ENDFILE{if (f==0) print s; f=0}' file*
Like the sed command, this can tackle multiple files all in one command.