I am looking for the optimal (fastest) way to find the exact overlap between two arrays in numpy. Given two arrays x and y
x = array([1,0,3,0,5,0,7,4],dtype=
result = numpy.where(x == y, x, 0)
Have a look at numpy.where documentation for explanation. Basically, numpy.where(a, b, c), for a condition a returns an array of shape a, and with values from b or c, depending upon whether the corresponding element of a is true or not. b or c can be scalars.
By the way, x & y is not necessarily "always true" for two positive numbers. It does bitwise-and for elements in x and y:
x = numpy.array([2**p for p in xrange(10)])
# x is [ 1 2 4 8 16 32 64 128 256 512]
y = x - 1
# y is [ 0 1 3 7 15 31 63 127 255 511]
x & y
# result: [0 0 0 0 0 0 0 0 0 0]
This is because the bitwise representation of each element in x is of the form 1 followed by n zeros, and the corresponding element in y is n 1s. In general, for two non-zero numbers a and b, a & b may equal zero, or non-zero but not necessarily equal to either a or b.