I have a problem with color animation. This is my source:
I think that understanding the error might give you a way of fixing the problem.
Animation requires the use of threads besides the UI thread. So storyboards have to be freezable, which means that all the animations in the storyboard must be freezable, and everything those animations use must also be freezable.
Bindings aren't freezable - pretty much by definition, as they are a mechanism whereby a dependency property can be changed. You can't use a dynamic binding in a color animation - there's the possibility that the property could change while the animation was running. The same thing happens whether you're binding to an object or you're using DynamicResource.
The thing is, this is protecting you from something that you don't really want anyway. You don't really want the colors to change while the animation is running. That's not what you're trying to accomplish. You want the color resources that the animation is using to change if the user selects a different skin.
So instead of binding storyboards to skinnable resources, add the storyboards to the dictionary of resources that get set when the skin changes (using static bindings to set the colors), and use dynamic binding in your event triggers. That should work.