I have a bit of code that opens an xls workbook;
Excel.Workbooks workBooks;
workBooks = excelApp.Workbooks;
workbook = workBooks.Open(sourceFilePath + source
Why not combine the 2. This will take care of any problems with closing before saving is complete.
There is an option in the Close method to save the file.
workbook.Close(true, fileName, Missing.Value);
Also if the file is saving correctly, and your problem is purely because the excel.exe process is still running, it could be because you didn't close and release EVERYTHING needed. I have had this before and developed a more complete close down routine. My code for shutting down an excel file is:
book.Close(true, fileName, Missing.Value); //close and save individual book
allBooks.Close(); //close all books
excel.Quit();
Marshal.ReleaseComObject(allCells); //any used range objects
Marshal.ReleaseComObject(sheet);
Marshal.ReleaseComObject(sheets);
Marshal.ReleaseComObject(book);
Marshal.ReleaseComObject(allBooks);
Marshal.ReleaseComObject(excel);
This works 100% of the time for me.