I never had an overflow error in Mathematica, the following happened.
I demo-ed the principle of RSA-encryption as follows:
n = 11*13
m = EulerPhi[
Yes, you have gone through the limits of Mathematica. The maximum number that can be represented on a system in a particular version of Mathematica is shown by $MaxNumber. In your second example, d=18158086021982021938023 and hence 27136050989627^d is way way larger than $MaxNumber.
You can use PowerMod in the second step too like you did for d, which will compute a^b mod n more efficiently than Mod. With decipher2[x_List] := FromCharacterCode[Map[PowerMod[#, d, n] &, x]], you get:
cipher2["StackOverflow"]
decipher2[cipher2["StackOverflow"]]
Out[1]= {27136050989627, 282621973446656, 80798284478113, \
93206534790699, 160578147647843, 19203908986159, 318547390056832, \
107213535210701, 250226879128704, 114868566764928, 171382426877952, \
207616015289871, 337931541778439}
Out[2]= "StackOverflow"