I have several applications that I wish to deploy using rpm. Some of the files in my application deployments override files from other deployed packages. Simply including
To the best of my knowledge, RPM is not designed to permit updating / replacing existing files, so anything that you do is going to be a hack.
Of the options you list, I'd choose #1 as the least bad hack if the target systems are systems that I admin (as you say, it's more work but is the cleanest solution) and a combination of #2 and #4 (symlinks where possible, copies where not) if I'm creating the RPMs for others' systems (to avoid having to distribute a bunch of RPMs, but I'd make it very clear in the docs what I'm doing).
You haven't described which files need to be updated or replaced and how they need to be updated. Depending on the answers to those questions, you may have a couple of other options:
.d subdirectory. For example, Apache uses /etc/httpd/conf/httpd.conf and /etc/httpd/conf.d/*.conf, so your RPMs could drop files under /etc/httpd/conf.d instead of modifying /etc/httpd/conf/httpd.conf. And if the files that you need to modify are config files that don't follow this pattern but could be made to, you can suggest to the package maintainers that they add this capability; this wouldn't help you immediately but would make future releases easier.sendmail and lpr that can be provided by multiple packages, the alternatives system (see man alternatives) permits more than 1 RPM that provides these utilities to be installed side by side. Again, if the files that you need to modify are command-line utilities that don't follow this pattern but could be made to, you can suggest to the package maintainers that they add this capability./opt just so I wouldn't have to stomp on files installed by other admins' RPMs./opt, and the Software Collections tools offer a standardized way for users to opt in to using those instead of whatever's normally installed under /usr. Red Hat uses this to distribute newer versions of tools for their otherwise stable and long-lived (i.e., older) Red Hat Enterprise Linux distributions.