I\'m considering using Annotations to define my Hibernate mappings but have run into a problem: I want to use a base entity class to define common fields (including the ID
In the code above, it looks like you're mixing annotations on fields (superclass) and methods (subclass). The Hibernate reference documentation recommends avoiding this, and I suspect it might be causing the problem. In my experience with Hibernate, it's safer and more flexible to annotate getter/setter methods instead of fields anyway, so I suggest sticking to that design if you can.
As a solution to your problem, I recommend removing the id field from your Base superclass altogether. Instead, move that field into the subclasses, and create abstract getId() and setId() methods in your Base class. Then override/implement the getId() and setId() methods in your subclasses and annotate the getters with the desired generation strategy.
Hope this helps.