How to call module written with argparse in iPython notebook

Question

I am trying to pass BioPython sequences to Ilya Stepanov\'s implementation of Ukkonen\'s suffix tree algorithm in iPython\'s notebook environment. I am stumbling on the argp

Answer 1

I face a similar problem in invoking argsparse, the string '-f' was causing this problem. Just removing that from sys.srgv does the trick.

import sys
if __name__ == '__main__':
    if '-f' in sys.argv:
        sys.argv.remove('-f')
    main()