I have a data which contain some NA value in their elements. What I want to do is to perform clustering without removing rows where the NA is present.
Using as.numeric may help in this case, but I do think that the original question points to a bug in the daisy function. Specifically, it has the following code:
if (any(ina <- is.na(type3)))
stop(gettextf("invalid type %s for column numbers %s",
type2[ina], pColl(which(is.na))))
The intended error message is not printed, because which(is.na) is wrong. It should be which(ina).
I guess I should find out where / how to submit this bug now.