JFlex is a flex implementation for Java, and there is now a C# port of that project http://sourceforge.net/projects/csflex/. There also appears to be a C# port of CUP in progress, which can be found here: http://sourceforge.net/projects/datagraph/
I too would recommend avoiding hand crafting your own solution. I tried this once myself for a very simple language (part of a university project) and it was incredibly time consuming and difficult. It is also exceedingly hard to maintain and change once written.
Using an existing parser generator is the way to go, as the bulk of the hard work has been done and has been well tested over the years.
