The problem i run into is that sometimes entire headers and data values are missing in the dataset and therefore using the last row in the script the data
I suggest, rather than copying column by column, you instead copy row by row.
Public Sub CopyData()
Dim inputRow As Long
Dim outputRow As Long
Dim inputSheet As Worksheet
Dim outputSheet As Worksheet
Set inputSheet = Worksheets("Sheet1")
Set outputSheet = Worksheets("Sheet2")
'First, copy the headers
inputSheet.Rows(1).Copy outputSheet.Rows(1)
'Next, copy the first row of data
inputSheet.Rows(2).Copy outputSheet.Rows(2)
'Loop through the rest of the sheet, copying the data row for each additional header row
inputRow = 3
outputRow = 3
While inputSheet.Cells(inputRow, 1) <> ""
inputRow = inputRow + 1 'increment to the data row
inputSheet.Rows(inputRow).Copy outputSheet.Rows(outputRow)
inputRow = inputRow + 1 'increment to the next potential header row
outputRow = outputRow + 1 'increment to the next blank output row
Wend
End Sub