I have an application which is a launcher for another application (my main one). The launcher goes to an FTP server, downloads updates and installs them. However, the update
Doing so would violate the basic principle of User Access Control.
There is no way to elevate permissions while avoiding the prompts, by design. If there was a way to do this, UAC would become useless.
That being said, you could try to design around the issue. Instead of making your program a startup/system tray application, you may want to consider making a windows service that does the update. This could run as an administrator on boot (instead of login), and it would already run with elevated permissions.
If you need a system tray application, it could be a separate app that "talks" to the service.