I have a desktop application in which I would like to know two things:
You could use a global keyboard/mouse hook and just reset your "counter" to 0 when you receive an event from either. When your counter reaches the idle time that you're looking for, perform your background actions.
There is some code here that allows you to easily do the hooking in .NET: http://www.codeproject.com/KB/cs/globalhook.aspx