I had a similar question. but what i am trying now is to read files in .txt format into MATLAB. My problem is with the headers. Many times due to errors the system rewrites
It turns out that you can still use textscan. Except that you read everything as string. Then, you attempt to convert to double. 'str2double' returns NaN for strings, and since headers are all strings, you can identify header rows as rows with all NaNs.
For example:
%# find and open file
[c,pathc]=uigetfile({'*.txt'},'Select the data','V:\data');
file=[pathc c];
fid = fopen(file);
%# read all text
strData = textscan(fid,'%s%s%s%s%s%s','Delimiter',',');
%# close the file again
fclose(fid);
%# catenate, b/c textscan returns a column of cells for each column in the data
strData = cat(2,strData{:});
%# convert cols 3:6 to double
doubleData = str2double(strData(:,3:end));
%# find header rows. headerRows is a logical array
headerRowsL = all(isnan(doubleData),2);
%# since I guess you know what the headers are, you can just remove the header rows
dateAndTimeCell = strData(~headerRowsL,1:2);
dataArray = doubleData(~headerRowsL,:);
%# and you're ready to start working with your data