I am trying to change the bindingRedirect element at install time by using the XmlDocument class and modifying the value directly. Here is what my app.config looks like:
Sounds like you've got your configuration file tweak working now, but I thought you might still be interested in how to adjust binding redirects at run time. The key is to use the AppDomain.AssemblyResolve event, and the details are in this answer. I prefer it over using the configuration file, because my version number comparison can be a bit more sophisticated and I don't have to tweak the configuration file during every build.