I work with the brazilian \"Nota Fiscal Eletronica\" project, in which they define a standart way to sign XML documents.
Recently, they started to require that there
the signature blocks are encoding binary information as Base64, which must follow some formating including line breaks (see http://en.wikipedia.org/wiki/Base64). So you simply can't remove them without alter the information.
a better way to redure network traffic, is to use comression before sending data.