After submitting an app update using Application Loader, I got this email from Apple:
We have discovered one or more issues with your recent delivery
The solution here was in this answer. We needed to use the new -exportOptionsPlist flag with xcodebuild instead of the older -exportFormat and -exportWithOriginalSigningIdentity flags. The plist just needs to have the method key set to app-store.
-exportOptionsPlist
xcodebuild
-exportFormat
-exportWithOriginalSigningIdentity
method
app-store