This answer using map reduce by drcosta from another question did the trick
In mongo, how do I use map reduce to get a group by ordered by most recent
mapper = function () {
emit(this.category, {top:[this.score]});
}
reducer = function (key, values) {
var scores = [];
values.forEach(
function (obj) {
obj.top.forEach(
function (score) {
scores[scores.length] = score;
});
});
scores.sort();
scores.reverse();
return {top:scores.slice(0, 3)};
}
function find_top_scores(categories) {
var query = [];
db.top_foos.find({_id:{$in:categories}}).forEach(
function (topscores) {
query[query.length] = {
category:topscores._id,
score:{$in:topscores.value.top}
};
});
return db.foo.find({$or:query});