I\'m trying to install Anaconda on my Windows 7 machine. I often use cygwin to for my command-line work, and I would like to manage Anaconda from there. I\'ve worked through
I'm a little late in coming to this, but I was having the same problem as you @thomasshouler. Try adding the export line below to the end of the .bash_profile and .profile files as well as your .bashrc file (as mentioned above). Make sure to "source .bash_profile" etc for each file.
export PATH=/cygdrive/c/anaconda:$PATH