The new version of R Markdown is based on pandoc, so you can easyly change the output format.
My Problem is to get markdown formated tables from e.g. regression mode
Here what I did some hours ago:
Some data:
```{r}
lm1 <- lm(qsec ~ hp, mtcars)
lm2 <- lm(qsec ~ wt, mtcars)
```
We use the package sjPlot
```{r}
library(sjPlot)
tab_model(lm1,lm2, file="output.html")# You have to save the table in html format.
```
The next part needs to be outside the chunk in markdown:
htmltools::includeHTML("output.html")