This is my personal method. Depending on the length of the join condition I sometimes indent it on the line below.
SELECT
column1,
column2
FROM
table1
WHERE
column3 IN (
SELECT TOP(1)
column4
FROM
table2
INNER JOIN table3 ON table2.column1 = table3.column1
)
SELECT
column1,
column2
FROM
table1
WHERE
column3 IN (
SELECT TOP(1)
column4
FROM
table2
INNER JOIN table3
ON table2.column1 = table3.column1 -- for long ones
)