I have this problem where I open Visual Studio and the internal windows are scattered all over the place. None of them are docked; some that should be visible have become in
I just came across this issue in VS 2012, reset window layout was doing nothing.
I extrapolated
%APPDATA%\Application Data\Microsoft\VisualStudio\9.0\windows.prf
to
%appdata%\Microsoft\VisualStudio\11.0\Windows.index
... deleted it and was back in business!