What techniques exists in R to visualize a “distance matrix”?

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你的背包
你的背包 2020-12-12 10:16

I wish to present a distance matrix in an article I am writing, and I am looking for good visualization for it.

So far I came across balloon plots (I used it here, b

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  •  旧时难觅i
    2020-12-12 10:49

    You could also use force-directed graph drawing algorithms to visualize a distance matrix, e.g.

    nba <- read.csv("http://datasets.flowingdata.com/ppg2008.csv")
    dist_m <- as.matrix(dist(nba[1:20, -1]))
    dist_mi <- 1/dist_m # one over, as qgraph takes similarity matrices as input
    library(qgraph)
    jpeg('example_forcedraw.jpg', width=1000, height=1000, unit='px')
    qgraph(dist_mi, layout='spring', vsize=3)
    dev.off()
    

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