I have 500 files with name fort.1, fort.2 ... fort.500. Each file contains 800 data as below:
1 0.485 2 0.028 3 0.100
Assuming the first column is an ID:
cat fort.* | awk '{sum[$1] += $2; counts[$1]++;} END {for (i in sum) print i, sum[i]/counts[i];}'