I used to have Eclipse 3.5.2 working from my Limited User Account (i.e. not Administrator).
But when I upgraded to 3.6.2, Eclipse refuses to run in the Limited User
Here is another reason why this message appears. It may seem an obvious thing to check, but if the read-only flag is set on the .fileTableLock file (this is in Windows, don't know about Linux) then you'll also get that Access Denied error. This arose because we were unzipping a pre-configured workspace and configuration into our users' IDE environments.